I’m almost 100% positive that yes it will still work and depending on what kind of audio your going for you could prolly use that factory amp to power the mid’s & high’s permanently and just use amp to power the sub(s) - unless of course your putting some crazy 1,000watt subs in there then you may need a bit more power for the speaks & tweets - at that point you may need to upgrade those too
Even once you get your sub in there I believe you can still keep the factory sub plugged in/working as well just needs to be tuned down… run as much as you can from the factory amp, use aftermarket amp to strictly power sub
Even once you get your sub in there I believe you can still keep the factory sub plugged in/working as well just needs to be tuned down… run as much as you can from the factory amp, use aftermarket amp to strictly power sub